Showing posts with label data management system. Show all posts
Showing posts with label data management system. Show all posts

Saturday, 13 November 2010

Oxford Research Data Management Pages

The University of Oxford has launched the Research Data Management Website. This thematic site has been developed by Research Services in collaboration with OUCS and OULS as part of the EIDCSR Project.


The RDM website is designed to support researchers with their research data management activities and includes information about:

  • research funder requirements in the area of research data management
  • services available within the University to assist researchers in this area
  • guidance on how to produce a data management plan as part of a funding application
  • further sources of advice and online guidance, updates and news, and tools and training available to help.

Previously, web-based information about research data management was available from a number of sites across the University but it was felt that a single source of `signposting’ information would be a valuable resource for researchers from all subject disciplines at differing stages of the research cycle, increasing understanding of the benefits of improved research data management, as well as communicating the range of services available.

Tuesday, 13 July 2010

Open Repositories 2010 in Madrid



This years the Open Repository Conference 2010 was held in Madrid organised by the he Spanish Foundation for Science and Technology FECYT and UNED, a Spanish public university that provides distance education.

Many of the talks discussed issues around research data and digital repositories. In the initial keynote, Prof. David de Roure emphasized the importance of capturing the research data but also the methods behind the data. In the future repositories will have a role in managing knowledge packs made of data, metadata, workflows, articles, presentations, results, etc.

The conference had a strong pressence from activities using the eSciDoc repository system based on Fedora. The BW eLab project uses this infrastructure to provide access to remote laboratory instruments as well as to manage the experimental data generated in the labs. During the workflow process eSync Daemon is used to monitor the file system of the computer connected to the instruments . The daemon replicates the new files and sends to a deposit where metadata is extracted to them deposit data and metadata in eSciDoc. A similar synchronization is used in the BRIL Project to monitor researcher's own desktop to capture as much data and metadata as possible.

Another interesting talk presented an open source repository for medical scientific research known as MIDAS. The system is used for the Insight Journal which provides open-access to articles, data, code, and reviews with an archive which hosts public collections of image datasets such as MRIs.

Other repository frameworks included Hydra, a collaboration between the Universities of Hull, Stanford and Virginia, that uses a technical architecture based on Fedora with a toolkit of reusable components that can assist with a range of content management, access and preservation. The University of Hull IR provides a Hydra use case.

Microsoft announced the release of v2.0 of their repository platform Zentity which makes use of the Open Data Protocol and uses Pivot for visualising and organising the data (see this example of pivot in action). The installation support services such as OAI-ORE and SWORD.

In the national approaches session the results of the Australian institutional research repository data readiness surveys 2010 were presented. Although repository managers are aware of ANDS and its services, there is little use of them and less than half of respondents were planning to incoorporate data in their repositories.

This has truly been a rewarding and stimulating conference.

Friday, 7 May 2010

A new interesting project: Data Management for Bio-Imaging











A new data management project funded by JISC known as Data Management for Bio-Imaging has just created a wiki that will contain relevant information about the project.


The aim of the project is to generate better understanding and planning of data management for bio-imaging within the John Innes Centre

The project plans to document the data flows and infrastructure in the Coen Lab and the JISC Bio-Imaging service. In both cases they use sophisticated instruments such as light microscopy, CCD systems and confocal microscopy generating terabytes of imaging data.

To address their data management needs they are deploying an Open Microscopy Environment known as OMERO which features like:

- Managing and organizing
- Search&Browsing
- 3D Projection
- Metadata, annotation, tagging
- Share, Export, Import

In addition to this, they will train users, including post-docs, to use the system as well as defining strategies to handle user acceptance and encourage image processing.

This is an extremely interesting activity and we´ll surely keep a close eye.

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